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AH^AH – Alpha Helices Assessed by Humans.
Can you help our research, by sparing about 15 minutes of your time to participate in our crowd-sourcing experiment? Click here!We have created a game-like web-application to classify protein helices....
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Journal club: NetMHCIIpan-3.0
Journal club (Bernhard Knapp): NetMHCIIpan-3.0This week’s topic of the Journalclub was about the prediction of potential T cell epitopes (=prediction of the binding affinity between peptides and MHC)....
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Journal club: Half a century of Ramachandran plots
In last week’s journal club we delved into the history of Ramachandran plots (Half a century of Ramachandran plots; Carugo & Djinovic-Carugo, 2013). Polypeptide backbone dihedral angles. Source:...
View ArticleAnnotate Antibody CDR and Framework Residues
IntroAntibodies have very well conserved structures and their binding site is chiefly comprised of the six CDRs. The great similarity between the 1700+ antibody structures that can be found in...
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How many bins?
As it’s known in non-parametric kernel density estimation the effect of the bandwidth on the estimated density is large and it is usually the parameter who makes the tradeoff between bias and roughness...
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Efficient discovery of overlapping communities in massive networks
Detecting overlapping communities is essential to analyzing and exploring natural networks such as social networks, biological networks, and citation networks. However, most existing approaches do not...
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